Linkage analysis between dominant and co-dominant makers in full-sib families of out-breeding species

As high-throughput genomic tools, such as the DNA microarray platform, have lead to the development of novel genotyping procedures, such as Diversity Arrays Technology (DArT) and Single Nucleotide Polymorphisms (SNPs), it is likely that, in the future, high density linkage maps will be constructed from both dominant and co-dominant markers. Recently, a strictly genetic approach was described for estimating recombination frequency (r) between co-dominant markers in full-sib families. The complete set of maximum likelihood estimators for r in full-sib families was almost obtained, but unfortunately, one particular configuration involving dominant markers, segregating in a 3:1 ratio and co-dominant markers, was not considered. Here we add nine further estimators to the previously published set, thereby making it possible to cover all combinations of molecular markers with two to four alleles (without epistasis) in a full-sib family. This includes segregation in one or both parents, dominance and all linkage phase configurations

In Silico Approach For Characterization And Comparison Of Repeats In The Genomes Of Oil And Date Palms

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Transposable elements (TEs) are mobile genetic elements present in almost all eukaryotic genomes. Due to their typical patterns of repetition, discovery, and characterization, they demand analysis by various bioinformatics software. Probably, as a result of the need for a complex analysis, many genomes publicly available do not have these elements annotated yet. In this study, a de novo and homology-based identification of TEs and microsatellites was performed using genomic data from 3 palm species: Elaeis oleifera (American oil palm, v.1, Embrapa, unpublished; v.8, Malaysian Palm Oil Board [MPOB], public), Elaeis guineensis (African oil palm, v. 5, MPOB, public), and Phoenix dactylifera (date palm). The estimated total coverage of TEs was 50.96% (523 572 kb) and 42.31% (593 463 kb), 39.41% (605 015 kb), and 33.67% (187 361 kb), respectively. A total of 155 726 microsatellite loci were identified in the genomes of oil and date palms. This is the first detailed description of repeats in the genomes of oil and date palms. A relatively high diversity and abundance of TEs were found in the genomes, opening a range of further opportunities for applied research in these genera. The development of molecular markers (mainly simple sequence repeat), which may be immediately applied in breeding programs of those species to support the selection of superior genotypes and to enhance knowledge of the genetic structure of the breeding and natural populations, is the most notable opportunity.11JAFF by the Coordination for the Improvement of Higher Education Personnel (CAPES)Foundation within the Ministry of Education in Brazil via the Graduate Program in Plant Biotechnology, Federal University of Lavras (UFLA)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES

Breeding Jatropha curcas by genomic selection: A pilot assessment of the accuracy of predictive models

Genomic wide selection is a promising approach for improving the selection accuracy in plant breeding, particularly in species with long life cycles, such as Jatropha. Therefore, the objectives of this study were to estimate the genetic parameters for grain yield (GY) and the weight of 100 seeds (W100S) using restricted maximum likelihood (REML); to compare the performance of GWS methods to predict GY and W100S; and to estimate how many markers are needed to train the GWS model to obtain the maximum accuracy. Eight GWS models were compared in terms of predictive ability. The impact that the marker density had on the predictive ability was investigated using a varying number of markers, from 2 to 1,248. Because the genetic variance between evaluated genotypes was significant, it was possible to obtain selection gain. All of the GWS methods tested in this study can be used to predict GY and W100S in Jatropha. A training model fitted using 1,000 and 800 markers is sufficient to capture the maximum genetic variance and, consequently, maximum prediction ability of GY and W100S, respectively. This study demonstrated the applicability of genome-wide prediction to identify useful genetic sources of GY and W100S for Jatropha breeding. Further research is needed to confirm the applicability of the proposed approach to other complex traits

Simultaneous selection of eucalyptus clones based on yield, stability and adaptability

O objetivo deste trabalho foi estimar os parâmetros genéticos e determinar a eficiência da seleção simultânea de clones de eucalipto baseada em produtividade, estabilidade e adaptabilidade. Foram utilizados 21 clones, com 36 meses de idade, pertencentes ao programa de melhoramento genético da empresa Cenibra. O experimento foi instalado em delineamento de blocos ao acaso, em quatro ambientes, com 21 repetições de uma planta por parcela. Os clones foram avaliados quanto às variáveis: diâmetro à altura do peito, altura da planta e volume total com casca. Os parâmetros genéticos foram estimados pela metodologia de modelos mistos (REML/BLUP), e a seleção baseou-se no método da média harmônica do desempenho relativo dos valores genéticos (MHPRVG), em três estratégias: seleção com base no valor genético predito, tendo-se considerado o desempenho médio dos genótipos em todos os ambientes (sem efeito de interação) ou o desempenho em cada ambiente (com efeito da interação); e seleção simultânea quanto à produção, estabilidade e adaptabilidade. As particularidades dos ambientes influenciaram a expressão fenotípica dos clones. As estimativas de herdabilidade indicaram boas perspectivas para a seleção de clones com alta produtividade, estabilidade e adaptabilidade. A seleção simultânea otimiza a seleção de clones e pode ser usada na construção de populações de melhoramento e na recomendação de materiais genéticos para plantios comerciais.The objective of this work was to estimate genetic parameters and to determine the efficiency of the simultaneous selection of eucalyptus clones based on yield, stability, and adaptability. Twenty‑one clones, with 36 months of age, from the genetic breeding program of the company Cenibra were used. The experiment was done in a randomized complete block design, in four environments, with 21 replicates of one plant per plot. The clones were evaluated as to the variables: diameter at breast height, plant height, and total volume with bark. The genetic parameters were estimated using the mixed model procedure (REML/BLUP), and selection was based on the harmonic mean of the relative performance of the genetic values (HMRPGV), with three strategies: selection based on the predicted genetic gain, considering the average performance of genotypes in all environments (without interaction effect) or the performance on each environment (with interaction effect); and simultaneous selection based on productivity, stability, and adaptability. Environment particularities influenced the phenotypic expression of the clones. The heritability estimates indicated good perspectives for selecting clones with high yield, stability, and adaptability. Simultaneous selection optimizes clone selection and can be used in the construction of breeding populations and in the recommendation of genetic materials for commercial plantations

Does resistance training improve body image satisfaction among the elderly? A cross-sectional study

OBJECTIVE: This study aims to evaluate whether body image satisfaction improves with practice in resistance training in elderly women. METHODS: Forty women were selected and randomly divided into an untrained group (UN) group and a group trained in resistance exercises (RT). To evaluate body image satisfaction, the silhouette matching task was used. RESULTS: No differences were found between current (5.45±0.24) and ideal (4.7±0.12) silhouettes in the RT group. However, the UN group showed a significant difference (po0.01) between current (10.4±0.43) and ideal (5.6±0.26) silhouettes. The current silhouette was significantly different between the UN and RT groups (po0.002). However, the ideal silhouette value did not differ between them. Body satisfaction was present in 90% of the participants in the RT group, and the difference was 15% less than that in the UN group (x2 test, po0.001). CONCLUSION: Resistance training in elderly women can promote satisfaction with their body image

Desempenho fotossintético de genótipos contrastantes de pinhão-manso durante estádios de florescimento e frutificação

O objetivo deste trabalho foi avaliar processos fisiológicos em genótipos contrastantes de pinhão-manso (Jatropha curcas), durante as fases de florescimento e frutificação. As trocas gasosas foram mensuradas com analisador de gás por infravermelho, e as características morfológicas foram avaliadas em cada fase sob condições naturais, em delineamento de blocos ao acaso, com cinco repetições. As diferenças no rendimento entre os acessos de J. curcas não estiveram relacionadas ao desempenho fotossintético, mas sim ao número de inflorescências e flores femininas, que são geneticamente determinadas. Além disso, a assimilação líquida de CO2 foi similar em ambos os genótipos, apesar de eles terem diferido na produção de frutos. Os genótipos diferiram consistentemente quanto à eficiência de carboxilação e à regeneração da ribulose bifosfato. Finalmente, o crescimento de ramo de J. curcas não é prejudicado pelo aumento no dreno durante a frutificação, e os frutos possivelmente estavam exercendo efeito positivo na assimilação líquida de CO2, o que pode ter permitido que as plantas mantivessem o crescimento ao produzir flores e frutos.The objective of this work was to evaluate physiological processes in contrasting physic nut (Jatropha curcas) genotypes during the flowering and fruiting stages. Gas exchange parameters were measured using an infrared gas analyzer, and morphological traits were evaluated during each stage under natural conditions, in a randomized complete block design with five replicates. Differences in yield between J. curcas accessions were not related to photosynthetic performance, but rather to the number of inflorescences and female flowers, which are genetically determined. Moreover, the net CO2 assimilation was equivalent in both genotypes, although they produced different amount of fruit. The genotypes differed consistently in terms of carboxylation efficiency and ribulose bisphosphate regeneration. Finally, J. curcas branch growth is not impaired by the increased sink strength during fruiting, and fruit may have been actually exerting a positive effect on the net CO2 assimilation, which may have enabled plants to maintain growth while producing flowers and fruits

Survival time among patients who were diagnosed with tuberculosis, the precocious deaths and associated factors in southern Brazil

Background: A diagnosis of tuberculosis (TB) does not mean that the disease will be treated successfully, since death may occur even among those who are known to the health services. Here, we aimed to analyze patient survival time from the diagnosis of TB to death, precocious deaths, and associated factors in southern Brazil. Methods: We conducted a longitudinal study with patients who were diagnosed with TB and who died due to the disease between 2008 and 2015 in southern Brazil. The starting point for measuring survival time was the patient’s diagnosis date. Techniques for survival analysis were employed, including the Kaplan-Meier test and Cox’s regression. A mixed-effect model was applied for identifying the associated factors to precocious deaths. Hazard ratio (HR) and odds ratio (OR) with 95% confidence intervals (95% CI) were estimated. We defined p value <0.05 as statistically significant for all statistics applied. Results: One hundred forty-six patients were included in the survival analysis, observing a median survival time of 23.5 days. We observed that alcoholism (HR=1.55, 95% CI=1.04-2.30) and being male (HR=6.49, 95% CI=1.03-2.68) were associated with death. The chance of precocious death within 60 days was 10.48 times greater than the chance of early death within 30 days. Conclusion: Most of the deaths occurred within 2 months after the diagnosis, during the intensive phase of the treatment. The use of alcohol and gender were associated with death, revealing inequality between men and women. This study advanced knowledge regarding the vulnerability associated with mortality. These findings must be addressed to fill a gap in the care cascades for active TB and ensure equity in health.publishersversionpublishe

Dietary Zinc Supplementation to Prevent Chronic Copper Poisoning in Sheep

The aim of this study was to evaluate whether zinc (Zn) supplementation protects against hepatic copper (Cu) accumulation in copper-loaded sheep. Forty cross-bred lambs were assigned to five experimental groups. These included the control group (C) and four treatment groups that received Cu and/or Zn supplementation (dry matter (DM) basis) over 14 weeks, as follows: Cu (450 mg Cu/kg); Zn-35 (450 mg Cu + 35 mg Zn/kg); Zn-150 (450 mg Cu + 150 mg Zn/kg); and Zn-300 (450 mg Cu + 300 mg Zn/kg). Blood, liver, and bile samples were obtained for mineral determination by inductively coupled plasma optical emission spectrometry (ICP–OES). The hepatic metallothionein (MT) concentrations were also determined. At the end of the experiment, hepatic Cu concentrations were higher in all Cu-supplemented groups than in C. Hepatic Cu accumulation was lower in the groups receiving the Zn supplementation than in the Cu group, although the difference was only statistically significant (66%) in the Zn-300 group. The MT concentrations tended to be higher (almost two-fold) in the Zn groups (but were not dose related) than in the C and Cu groups, and they were related to hepatic Zn concentrations. Zn supplementation at 300 mg/kg DM is useful for preventing excessive hepatic Cu accumulation in sheep exposed to high dietary concentrations of CuThis research was funded by the São Paulo Research Foundation (FAPESP). A research productivity fellowship was granted by the National Council for Scientific and Technological Development (CNPq) to AHHMS

Agronomic performance and genetic gain by selection of physic nut in three Brazilian regions

O objetivo deste trabalho foi avaliar o desempenho agronômico e o ganho genético pela seleção de famílias de meio-irmãos de pinhão-manso, cultivado em três regiões do Brasil. A partir de seleção fenotípica prévia, foram instalados três testes de progênies, em 2008, nos municípios de Planaltina, DF, Nova Porteirinha, MG, e Pelotas, RS. Utilizou-se o delineamento de blocos ao acaso, com três repetições e cinco plantas por parcela. Como testemunha, foram utilizadas sementes, colhidas ao acaso, de uma população sem seleção. Houve interação significativa entre os efeitos de genótipos por ambientes. As estimativas dos componentes de variância e dos parâmetros genéticos indicaram que é possível obter ganhos com a seleção das melhores famílias, nos ambientes avaliados. Em cada ambiente, ao menos uma família foi selecionada com desempenho superior ao tratamento-controle. O ganho genético médio, obtido pela seleção massal nos três ambientes, foi de 72%. Observou-se alto coeficiente de correlação entre os ambientes de Planaltina e Nova Porteirinha, quanto ao desempenho agronômico, o que não se repetiu no Município de Pelotas. A interação genótipo x ambiente deve ser considerada na recomendação de materiais genéticos de pinhão-manso para ambientes distintos.The objective of this study was to evaluate the agronomic performance and genetic gain by the selection of half-sib families of physic nut grown in three Brazilian regions. Based on previous phenotypic selection, three progeny tests were performed, in 2008, in the municipalities of Planaltina, DF, Nova Porteirinha, MG, and Pelotas, RS. A randomized complete block design was used, with three replicates, and five plants per plot. Randomly collected seeds from a population without selection were used as control. There was a significant interaction between the effects of genotypes and environments. Estimates of variance components and genetic parameters indicated that it is possible to obtain genetic gains from selection of the best families in the evaluated environments. In each environment, at least one family was selected with a higher performance than the control treatment. Mass selection in the three environments provided 72% of genetic gains. The agronomic performance had a high correlation coefficient between the environments of Planaltina and Nova Porteirinha, which did not occur in Pelotas. Genotype x environment interaction should be considered in the recommendations of physic nut genetic material for different environments

Desempenho agronômico e ganho genético pela seleção de pinhão‑manso em três regiões do Brasil

The objective of this study was to evaluate the agronomic performance and genetic gain by the selection of half‑sib families of physic nut grown in three Brazilian regions. Based on previous phenotypic selection, three progeny tests were performed, in 2008, in the municipalities of Planaltina, DF, Nova Porteirinha, MG, and Pelotas, RS. A randomized complete block design was used, with three replicates, and five plants per plot. Randomly collected seeds from a population without selection were used as control. There was a significant interaction between the effects of genotypes and environments. Estimates of variance components and genetic parameters indicated that it is possible to obtain genetic gains from selection of the best families in the evaluated environments. In each environment, at least one family was selected with a higher performance than the control treatment. Mass selection in the three environments provided 72% of genetic gains. The agronomic performance had a high correlation coefficient between the environments of Planaltina and Nova Porteirinha, which did not occur in Pelotas. Genotype x environment interaction should be considered in the recommendations of physic nut genetic material for different environments.O objetivo deste trabalho foi avaliar o desempenho agronômico e o ganho genético pela seleção de famílias de meio‑irmãos de pinhão‑manso, cultivado em três regiões do Brasil. A partir de seleção fenotípica prévia, foram instalados três testes de progênies, em 2008, nos municípios de Planaltina, DF, Nova Porteirinha, MG, e Pelotas, RS. Utilizou-se o delineamento de blocos ao acaso, com três repetições e cinco plantas por parcela. Como testemunha, foram utilizadas sementes, colhidas ao acaso, de uma população sem seleção. Houve interação significativa entre os efeitos de genótipos por ambientes. As estimativas dos componentes de variância e dos parâmetros genéticos indicaram que é possível obter ganhos com a seleção das melhores famílias, nos ambientes avaliados. Em cada ambiente, ao menos uma família foi selecionada com desempenho superior ao tratamento‑controle. O ganho genético médio, obtido pela seleção massal nos três ambientes, foi de 72%. Observou-se alto coeficiente de correlação entre os ambientes de Planaltina e Nova Porteirinha, quanto ao desempenho agronômico, o que não se repetiu no Município de Pelotas. A interação genótipo x ambiente deve ser considerada na recomendação de materiais genéticos de pinhão‑manso para ambientes distintos